Variant Details

Variant: esv3589199

Internal ID

6972134

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
	chr1:235709433..235709954	hg38	UCSC Ensembl
Inner	chr1:235709433..235709954	hg38	UCSC Ensembl
Outer	chr1:235708825..235710332	hg38	UCSC Ensembl
	chr1:235872733..235873254	hg19	UCSC Ensembl
Inner	chr1:235872733..235873254	hg19	UCSC Ensembl
Outer	chr1:235872125..235873632	hg19	UCSC Ensembl

Cytoband

1q42.3

Allele length

Assembly	Allele length
hg38	522
hg19	522

Variant Type

CNV loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv10333002, essv10332940, essv10333010, essv10333087, essv10333029, essv10332927, essv10333093, essv10333129, essv10332958, essv10333125, essv10332924, essv10333053, essv10333107, essv10333118, essv10332916, essv10332921, essv10333117, essv10332975, essv10332934, essv10332983, essv10332961, essv10332919, essv10333065, essv10332985, essv10332963, essv10333137, essv10332992, essv10332951, essv10333048, essv10333050, essv10333046, essv10333027, essv10333135, essv10333031, essv10333104, essv10333063, essv10333112, essv10333003, essv10333109, essv10333096, essv10333134, essv10332913, essv10333056, essv10333138, essv10333113, essv10333094, essv10333100, essv10333033, essv10333103, essv10333017, essv10333102, essv10333126, essv10333076, essv10332999, essv10333095, essv10333083, essv10333037, essv10333020, essv10332953, essv10332998, essv10332937, essv10332943, essv10333071, essv10333005, essv10333116, essv10333099, essv10333068, essv10333036, essv10333001, essv10333000, essv10332946, essv10333086, essv10333013, essv10333078, essv10332977, essv10333026, essv10333073, essv10333042, essv10332956, essv10332936, essv10332914, essv10333123, essv10332960, essv10333060, essv10333022, essv10333101, essv10332976, essv10333070, essv10332967, essv10333121, essv10333051, essv10333018, essv10333023, essv10332970, essv10333136, essv10333127, essv10332950, essv10333082, essv10333014, essv10333091, essv10332955, essv10333045, essv10332944, essv10333077, essv10332993, essv10333067, essv10332925, essv10333039, essv10333059, essv10332938, essv10333024, essv10333142, essv10333015, essv10332935, essv10332941, essv10332987, essv10333090, essv10333052, essv10333038, essv10333066, essv10332969, essv10333133, essv10333025, essv10333130, essv10332959, essv10333032, essv10332974, essv10332947, essv10333008, essv10333028, essv10333069, essv10333124, essv10332980, essv10332931, essv10332972, essv10332929, essv10333131, essv10332917, essv10333139, essv10332942, essv10333085, essv10332989, essv10333034, essv10333041, essv10333119, essv10333098, essv10332908, essv10332986, essv10333030, essv10333009, essv10333049, essv10332954, essv10332995, essv10332984, essv10333055, essv10332910, essv10332973, essv10333061, essv10333058, essv10332926, essv10333110, essv10333016, essv10332957, essv10333079, essv10333021, essv10332978, essv10332988, essv10332923, essv10332991, essv10332906, essv10333132, essv10333097, essv10333108, essv10333105, essv10333040, essv10333140, essv10333120, essv10332930, essv10332920, essv10332922, essv10333075, essv10333057, essv10332968, essv10333035, essv10332912, essv10332911, essv10333122, essv10332909, essv10333084, essv10333141, essv10333054, essv10333019, essv10333043, essv10333080, essv10332952, essv10333088, essv10333089, essv10333072, essv10333106, essv10333006, essv10332962, essv10332939, essv10333012, essv10333011, essv10332996, essv10332994, essv10333081, essv10332907, essv10333111, essv10332948, essv10332918, essv10332949, essv10333115, essv10332990, essv10333047, essv10333064, essv10332981, essv10333114, essv10332979, essv10333128, essv10332915, essv10332965, essv10333092, essv10332971, essv10333044, essv10333062, essv10332966, essv10332928, essv10333007, essv10333074, essv10332945, essv10332932, essv10332982, essv10332964, essv10332933, essv10332997, essv10333004

Samples

HG01985, HG02574, HG03484, HG02628, HG03378, HG02481, NA19204, HG03517, HG03449, HG02836, HG02798, HG03115, NA19350, HG02804, HG03521, HG03298, NA20294, HG03455, NA18504, NA19377, HG03126, HG03193, HG02589, NA20356, NA19920, HG03069, NA20359, HG02769, HG03478, HG03572, NA19171, HG02621, HG02952, NA19307, HG03091, HG02756, HG03224, HG01365, HG02816, HG02143, NA19041, NA18868, HG03212, NA19024, NA19172, HG02588, NA20355, NA18867, HG02943, HG02820, NA19908, HG03363, NA19455, HG02144, HG03081, HG02014, NA19654, HG03301, NA18879, HG02445, NA19750, HG02309, HG03046, NA19318, HG02635, HG02594, HG01956, HG02675, HG01896, HG02722, HG02330, NA19440, NA19256, NA18517, HG03437, NA19712, HG03458, NA20362, NA18865, HG02941, NA19428, NA19324, HG03473, NA20281, NA19328, NA18501, HG03112, HG02095, HG03066, HG03313, HG03279, NA19474, HG02107, HG03063, HG03060, HG02768, NA18876, NA19116, NA19711, HG03077, HG03470, HG03401, HG01914, HG02947, HG02855, NA19312, NA19463, HG02643, HG03439, HG03271, HG02760, HG03514, HG02339, HG03559, HG02890, NA19141, NA19222, HG02583, HG03548, HG03163, HG02973, NA20274, HG02433, HG03057, HG02318, NA18881, NA19020, NA18877, HG03558, HG02891, NA19795, NA18486, HG02870, HG03190, HG03100, HG03518, HG03297, HG03139, HG03577, NA19098, NA19314, HG02895, HG03074, HG03464, HG03135, HG02325, NA19198, HG03485, HG02620, HG02549, HG03105, HG03479, HG01242, HG02281, HG03209, HG03460, NA19383, HG03189, HG02315, NA18874, NA19159, HG03352, NA19189, NA18520, HG03058, HG03583, NA18908, HG03114, NA19451, HG03048, HG02009, HG02570, HG03160, NA19707, NA18934, HG01104, HG02582, HG02090, NA19462, NA19347, NA19152, HG03547, HG03291, HG02108, NA19236, HG02322, NA20126, NA18910, HG02497, HG02470, HG03294, HG03311, HG01390, HG03563, NA19114, NA19449, HG02817, HG03397, HG03571, NA20282, NA19257, HG03354, HG02586, HG03567, NA20296, NA19308, HG02613, HG03028, HG02282, HG03240, HG03461, HG02759, HG02501, NA19435, HG02923, NA19380, HG02314, HG03127, HG02839, HG02814, NA20348, HG03442, HG02970, HG03025, HG02938, HG01254, HG03258, HG02462, HG02676, HG03410, NA19096, NA19213, HG02052, HG02051, HG03445, HG02629, HG03118

Known Genes

LYST

Method

Sequencing

Analysis

Platform

Multiple platforms

Comments

Reference

1000_Genomes_Consortium_Phase_3

Pubmed ID

21293372

Accession Number(s)

esv3589199

Frequency

Sample Size	2504
Observed Gain	0
Observed Loss	237
Observed Complex	0
Frequency	n/a