Variant Details

Variant: esv3588053

Internal ID

6628353

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
	chr1:179486458..179489168	hg38	UCSC Ensembl
Inner	chr1:179486459..179489168	hg38	UCSC Ensembl
Outer	chr1:179486458..179489169	hg38	UCSC Ensembl
	chr1:179455593..179458303	hg19	UCSC Ensembl
Inner	chr1:179455594..179458303	hg19	UCSC Ensembl
Outer	chr1:179455593..179458304	hg19	UCSC Ensembl

Cytoband

1q25.2

Allele length

Assembly	Allele length
hg38	2711
hg19	2711

Variant Type

CNV loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv10197261, essv10197425, essv10197292, essv10197591, essv10197412, essv10197521, essv10197523, essv10197415, essv10197272, essv10197489, essv10197588, essv10197339, essv10197322, essv10197529, essv10197324, essv10197310, essv10197263, essv10197533, essv10197455, essv10197583, essv10197355, essv10197343, essv10197413, essv10197327, essv10197260, essv10197509, essv10197338, essv10197301, essv10197288, essv10197468, essv10197544, essv10197568, essv10197476, essv10197557, essv10197321, essv10197365, essv10197342, essv10197518, essv10197548, essv10197470, essv10197291, essv10197265, essv10197530, essv10197267, essv10197392, essv10197459, essv10197424, essv10197586, essv10197377, essv10197333, essv10197281, essv10197264, essv10197578, essv10197411, essv10197482, essv10197555, essv10197295, essv10197554, essv10197426, essv10197351, essv10197403, essv10197512, essv10197503, essv10197359, essv10197535, essv10197584, essv10197506, essv10197590, essv10197461, essv10197445, essv10197505, essv10197409, essv10197319, essv10197255, essv10197280, essv10197376, essv10197463, essv10197282, essv10197315, essv10197572, essv10197270, essv10197495, essv10197536, essv10197307, essv10197383, essv10197453, essv10197390, essv10197381, essv10197570, essv10197464, essv10197477, essv10197368, essv10197313, essv10197278, essv10197473, essv10197543, essv10197401, essv10197437, essv10197542, essv10197576, essv10197488, essv10197442, essv10197467, essv10197479, essv10197504, essv10197434, essv10197273, essv10197501, essv10197502, essv10197283, essv10197259, essv10197286, essv10197532, essv10197508, essv10197371, essv10197581, essv10197432, essv10197382, essv10197483, essv10197285, essv10197553, essv10197370, essv10197277, essv10197410, essv10197446, essv10197589, essv10197562, essv10197354, essv10197279, essv10197336, essv10197552, essv10197491, essv10197472, essv10197350, essv10197290, essv10197431, essv10197316, essv10197345, essv10197323, essv10197294, essv10197326, essv10197466, essv10197537, essv10197419, essv10197361, essv10197337, essv10197517, essv10197416, essv10197271, essv10197569, essv10197309, essv10197430, essv10197497, essv10197394, essv10197297, essv10197330, essv10197269, essv10197556, essv10197481, essv10197347, essv10197298, essv10197519, essv10197500, essv10197422, essv10197487, essv10197428, essv10197388, essv10197389, essv10197540, essv10197335, essv10197545, essv10197407, essv10197340, essv10197418, essv10197580, essv10197317, essv10197328, essv10197538, essv10197469, essv10197312, essv10197527, essv10197399, essv10197443, essv10197404, essv10197375, essv10197353, essv10197462, essv10197526, essv10197346, essv10197447, essv10197360, essv10197372, essv10197563, essv10197362, essv10197274, essv10197257, essv10197565, essv10197395, essv10197448, essv10197308, essv10197378, essv10197507, essv10197496, essv10197516, essv10197373, essv10197528, essv10197441, essv10197331, essv10197458, essv10197582, essv10197531, essv10197387, essv10197452, essv10197366, essv10197484, essv10197550, essv10197594, essv10197511, essv10197492, essv10197567, essv10197524, essv10197314, essv10197275, essv10197305, essv10197363, essv10197494, essv10197593, essv10197549, essv10197385, essv10197514, essv10197379, essv10197515, essv10197421, essv10197465, essv10197493, essv10197440, essv10197539, essv10197475, essv10197551, essv10197564, essv10197449, essv10197592, essv10197438, essv10197525, essv10197262, essv10197380, essv10197358, essv10197559, essv10197471, essv10197451, essv10197433, essv10197397, essv10197439, essv10197391, essv10197320, essv10197334, essv10197306, essv10197587, essv10197499, essv10197348, essv10197367, essv10197318, essv10197303, essv10197304, essv10197585, essv10197332, essv10197522, essv10197341, essv10197414, essv10197577, essv10197566, essv10197296, essv10197325, essv10197393, essv10197429, essv10197400, essv10197520, essv10197450, essv10197268, essv10197460, essv10197284, essv10197575, essv10197456, essv10197256, essv10197356, essv10197374, essv10197486, essv10197299, essv10197386, essv10197357, essv10197311, essv10197420, essv10197561, essv10197369, essv10197571, essv10197573, essv10197444, essv10197302, essv10197541, essv10197405, essv10197534, essv10197408, essv10197490, essv10197406, essv10197579, essv10197574, essv10197595, essv10197364, essv10197289, essv10197474, essv10197293, essv10197498, essv10197398, essv10197427, essv10197352, essv10197558, essv10197396, essv10197485, essv10197287, essv10197513, essv10197423, essv10197349, essv10197547, essv10197480, essv10197329, essv10197258, essv10197435, essv10197510, essv10197384, essv10197546, essv10197276, essv10197266, essv10197454, essv10197560, essv10197457, essv10197436, essv10197417, essv10197344, essv10197300, essv10197402, essv10197478

Samples

HG02574, HG01173, HG03484, HG03121, HG03378, NA19909, HG02002, HG00102, NA20508, HG03052, NA18861, HG01885, NA12273, HG03449, HG04076, HG03115, HG02012, HG02804, HG02323, HG03521, HG03298, HG03455, NA18504, HG03295, HG03229, NA20332, HG02888, HG03372, NA19920, NA12750, HG03572, HG03436, NA19379, NA19319, HG04038, HG03385, HG03452, HG01277, HG03091, NA18923, HG02595, HG02756, NA18916, HG03578, NA19457, HG01083, HG01365, HG00334, HG02603, HG00139, NA19923, NA20278, HG00148, HG02736, NA19024, NA19207, HG01525, NA19239, HG01771, NA20355, HG03073, NA19025, HG03394, HG00365, HG04075, NA20318, NA19921, NA19027, HG02479, HG02716, HG03343, HG00266, HG01435, HG01171, HG03907, HG03088, HG01669, HG02449, HG00101, HG01879, NA19455, NA19043, HG03457, HG02731, HG02144, HG02887, HG00263, NA18871, HG03081, HG02508, HG03027, HG00551, HG03472, NA18879, HG02309, HG01101, HG02783, HG02666, NA19452, HG03672, HG02256, HG02635, HG01697, HG01956, HG01107, HG02772, NA19652, HG02557, NA19390, NA19149, NA19147, HG03437, HG02308, HG01131, NA19454, HG00734, NA19331, HG01939, HG01396, HG01357, HG01174, NA21123, NA20362, HG03469, NA19428, NA19324, HG03473, HG02464, HG00116, NA20281, NA19783, NA12763, HG01342, HG00339, HG02771, NA19328, NA19117, HG00381, NA19223, HG03066, HG03063, NA19185, HG03351, NA18873, HG02013, NA18876, NA19116, NA19711, HG03470, NA19900, HG00105, NA20503, NA19030, HG02947, HG01756, HG02851, NA12890, NA20827, NA12154, HG03198, HG03439, NA19429, NA19214, NA19431, HG03265, HG00255, HG03096, HG02339, HG02890, HG02610, NA11995, NA19914, HG02973, HG03057, HG02337, HG00306, NA20532, NA18917, NA12045, HG03100, HG01456, HG03518, HG03297, NA19190, HG03095, HG03074, HG03464, NA12812, HG01070, HG01682, HG03640, HG03135, NA18489, HG03757, HG03499, NA19448, HG01064, HG02491, NA20317, HG02620, NA19916, HG03246, HG03105, NA19023, HG02922, HG02111, HG02505, HG03209, HG01893, HG00120, NA18874, HG03268, NA20819, HG02573, HG02461, HG01308, NA19471, HG03777, NA19159, HG03352, NA19901, NA19189, NA18520, HG03225, HG02946, HG00338, NA19209, HG03058, HG03055, NA18908, HG03270, HG03048, HG00739, HG00264, HG01942, HG01699, HG02009, HG00290, HG03120, NA19210, HG03908, HG03054, NA19657, NA19437, NA18934, NA19462, HG02511, HG03636, HG01612, HG01088, HG02554, NA19982, HG02307, NA18910, HG02968, HG02497, HG02470, HG02976, HG01049, HG03294, HG02555, HG03123, HG01615, HG03085, HG01161, NA19114, NA19655, HG03476, HG02817, HG03078, NA19031, HG02649, NA19113, NA19740, NA19320, HG03571, HG01705, HG01708, NA06985, HG03354, NA19160, NA19095, HG02586, HG03109, HG01990, HG02484, NA19436, HG03567, NA21087, NA19401, HG02807, HG00119, HG01190, HG03461, HG02759, HG03367, HG02501, HG00366, NA19473, HG00357, HG01362, NA19037, HG02923, NA19144, NA07051, NA19334, NA19439, NA20504, NA19310, NA19786, NA19467, HG03557, HG03419, HG00125, NA21125, NA19818, NA19376, HG03565, HG03039, NA20348, HG03442, NA19438, HG02970, HG02230, NA20334, NA19713, HG00174, HG03258, HG01089, HG02679, NA19213, HG01883, HG00252, HG03445, HG03162, HG02465, NA18511, HG01886, HG02629, HG03129, HG01976

Known Genes

AXDND1

Method

Sequencing

Analysis

Platform

Multiple platforms

Comments

Reference

1000_Genomes_Consortium_Phase_3

Pubmed ID

21293372

Accession Number(s)

esv3588053

Frequency

Sample Size	2504
Observed Gain	0
Observed Loss	341
Observed Complex	0
Frequency	n/a