A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3584885



Internal ID18770355
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr8:39378084..39529446hg38UCSC Ensembl
Innerchr8:39235603..39386965hg19UCSC Ensembl
Innerchr8:39354760..39506122hg18UCSC Ensembl
Cytoband8p11.22
Allele length
AssemblyAllele length
hg38151363
hg19151363
hg18151363
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv67e213
Supporting Variantsessv9838907, essv9838908
Samples2RB, OA064
Known GenesADAM3A, ADAM5
MethodSNP array
AnalysisWe applied stringent filtering criteria such that CNV had to be a minimum of 1 kb and span 5 consecutive probes, and be detected by at least 2 out of the 3 algorithms. In addition we excluded CNVs that were on the X and Y-chromosomes, or approximately 300 kb adjacent to the centromeres and telomeres.
PlatformAffymetrix Genome-Wide Human SNP Array 6.0
Comments
ReferenceMokhtar_et_al_2014
Pubmed ID24956385
Accession Number(s)esv3584885
Frequency
Sample Size34
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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