A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3584824



Internal ID18770294
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr4:188221875..189006348hg38UCSC Ensembl
Innerchr4:189143029..189927502hg19UCSC Ensembl
Innerchr4:189380023..190164496hg18UCSC Ensembl
Cytoband4q35.2
Allele length
AssemblyAllele length
hg38784474
hg19784474
hg18784474
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9837942
SamplesKSF005
Known GenesLINC01060
MethodSNP array
AnalysisWe applied stringent filtering criteria such that CNV had to be a minimum of 1 kb and span 5 consecutive probes, and be detected by at least 2 out of the 3 algorithms. In addition we excluded CNVs that were on the X and Y-chromosomes, or approximately 300 kb adjacent to the centromeres and telomeres.
PlatformAffymetrix Genome-Wide Human SNP Array 6.0
Comments
ReferenceMokhtar_et_al_2014
Pubmed ID24956385
Accession Number(s)esv3584824
Frequency
Sample Size34
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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