A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3584690



Internal ID18770160
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:34408482..34538187hg38UCSC Ensembl
Innerchr15:34700683..34830388hg19UCSC Ensembl
Innerchr15:32487975..32617680hg18UCSC Ensembl
Cytoband15q14
Allele length
AssemblyAllele length
hg38129706
hg19129706
hg18129706
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv21e213
Supporting Variantsessv9838868, essv9838865, essv9838874, essv9838872, essv9838864, essv9838876, essv9838870, essv9838875, essv9838869, essv9838866, essv9838877, essv9838862
SamplesOA062, 2RB, OA017, OA092, KSM008, 1WS, OA053, OA074, OA020, OA016, B10, 3LK
Known GenesGOLGA8A, GOLGA8B, MIR1233-1, MIR1233-2
MethodSNP array
AnalysisWe applied stringent filtering criteria such that CNV had to be a minimum of 1 kb and span 5 consecutive probes, and be detected by at least 2 out of the 3 algorithms. In addition we excluded CNVs that were on the X and Y-chromosomes, or approximately 300 kb adjacent to the centromeres and telomeres.
PlatformAffymetrix Genome-Wide Human SNP Array 6.0
Comments
ReferenceMokhtar_et_al_2014
Pubmed ID24956385
Accession Number(s)esv3584690
Frequency
Sample Size34
Observed Gain0
Observed Loss12
Observed Complex0
Frequencyn/a


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