A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3584602



Internal ID18423386
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr1:143541857..143751078hg38UCSC Ensembl
Innerchr1:149036524..149245728hg19UCSC Ensembl
Innerchr1:147303148..147512352hg18UCSC Ensembl
Cytoband1q21.1
Allele length
AssemblyAllele length
hg38209222
hg19209205
hg18209205
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv3e213
Supporting Variantsessv9837828
SamplesKSM006
Known GenesLOC101929780, NBPF23
MethodSNP array
AnalysisWe applied stringent filtering criteria such that CNV had to be a minimum of 1 kb and span 5 consecutive probes, and be detected by at least 2 out of the 3 algorithms. In addition we excluded CNVs that were on the X and Y-chromosomes, or approximately 300 kb adjacent to the centromeres and telomeres.
PlatformAffymetrix Genome-Wide Human SNP Array 6.0
Comments
ReferenceMokhtar_et_al_2014
Pubmed ID24956385
Accession Number(s)esv3584602
Frequency
Sample Size34
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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