Variant DetailsVariant: esv3584408 | Internal ID | 18712606 | | Landmark | | | Location Information | | | Cytoband | 20p13 | | Allele length | | Assembly | Allele length | | hg38 | 37224 | | hg19 | 37224 |
| | Variant Type | CNV loss | | Copy Number | | | Allele State | | | Allele Origin | | | Probe Count | | | Validation Flag | | | Merged Status | M | | Merged Variants | dgv1224e212 | | Supporting Variants | essv9818724, essv9819028, essv9818884, essv9819048, essv9818808, essv9819079, essv9818953, essv9818905, essv9818855, essv9819059, essv9818812, essv9818802, essv9819047, essv9818940, essv9818859, essv9818787, essv9818824, essv9818844, essv9819027, essv9818875, essv9819001, essv9818793, essv9818735, essv9819061, essv9818974, essv9818759, essv9819013, essv9819012, essv9818983, essv9819071, essv9819049, essv9818765, essv9818864, essv9818730, essv9818764, essv9818893, essv9818742, essv9818912, essv9818745, essv9818839, essv9818726, essv9818773, essv9819052, essv9818748, essv9818999, essv9819073, essv9818761, essv9818907, essv9818749, essv9818904, essv9819072, essv9818920, essv9818840, essv9818903, essv9818856, essv9818805, essv9818831, essv9818885, essv9818781, essv9818741, essv9819045, essv9818770, essv9818982, essv9818819, essv9818908, essv9819042, essv9818946, essv9818902, essv9818800, essv9818779, essv9819062, essv9818975, essv9818959, essv9818892, essv9818714, essv9818775, essv9818771, essv9818738, essv9818897, essv9819040, essv9818871, essv9818753, essv9818971, essv9818717, essv9818886, essv9818739, essv9819064, essv9818985, essv9819057, essv9818979, essv9818760, essv9819002, essv9818998, essv9818848, essv9818967, essv9818863, essv9818784, essv9818744, essv9819038, essv9819041, essv9818960, essv9818818, essv9818716, essv9818837, essv9819031, essv9818888, essv9819023, essv9818993, essv9818996, essv9818733, essv9818869, essv9818795, essv9818987, essv9818762, essv9818811, essv9818924, essv9818813, essv9818725, essv9818965, essv9818774, essv9818961, essv9818752, essv9818930, essv9818942, essv9819053, essv9818968, essv9819060, essv9818877, essv9818719, essv9818899, essv9819030, essv9818949, essv9818937, essv9818780, essv9818948, essv9818988, essv9819009, essv9818785, essv9818727, essv9818963, essv9818950, essv9818962, essv9818932, essv9818852, essv9819084, essv9819026, essv9818894, essv9818997, essv9818838, essv9818822, essv9818750, essv9818817, essv9818909, essv9818926, essv9818713, essv9819043, essv9818842, essv9818835, essv9818820, essv9818928, essv9818731, essv9819016, essv9818803, essv9819007, essv9818881, essv9818931, essv9819046, essv9818873, essv9819003, essv9819051, essv9818798, essv9818973, essv9819018, essv9818879, essv9818874, essv9818845, essv9818734, essv9818758, essv9818947, essv9818851, essv9818916, essv9818906, essv9818890, essv9818857, essv9818728, essv9818778, essv9819075, essv9819069, essv9818917, essv9818915, essv9818737, essv9819050, essv9819024, essv9819085, essv9818921, essv9819078, essv9818830, essv9818806, essv9818853, essv9818954, essv9819008, essv9819014, essv9819080, essv9818833, essv9819074, essv9818847, essv9818828, essv9818951, essv9818970, essv9818804, essv9819036, essv9819068, essv9818941, essv9818858, essv9818936, essv9818827, essv9818826, essv9818846, essv9818938, essv9818794, essv9818980, essv9818956, essv9819063, essv9818792, essv9818981, essv9818746, essv9818723, essv9818797, essv9819019, essv9818976, essv9819065, essv9818807, essv9818736, essv9819083, essv9819021, essv9818945, essv9819054, essv9818969, essv9819034, essv9818901, essv9818861, essv9819025, essv9818776, essv9818720, essv9818898, essv9818862, essv9818751, essv9819032, essv9818786, essv9818850, essv9818796, essv9818707, essv9818895, essv9818995, essv9818939, essv9819058, essv9818882, essv9818740, essv9818767, essv9818849, essv9818801, essv9818994, essv9818972, essv9818914, essv9818868, essv9819082, essv9818919, essv9819015, essv9818769, essv9819020, essv9818883, essv9818992, essv9818957, essv9818896, essv9818772, essv9818823, essv9818841, essv9818834, essv9818872, essv9818790, essv9818958, essv9819010, essv9819029, essv9819006, essv9818935, essv9818814, essv9818991, essv9818880, essv9818836 | | Samples | 400316SL, 400359OR, 401806DL, 400701MM, 401110GJ, 400908PJ, 400063BR, 400439IM, 400204SC, 400619MP, 400268SY, 400802DP, 401986LC, 400821FE, 400114GR, 401734PG, 400572PJ, 400101EH, 401380OL, 400429YF, 401036WS, 401302LJ, 401249TP, 400730SH, 401918CA, 401096SL, 401820SD, 401602PR, 400509CJ, 400453LN, 400558BL, 400486LS, 401551MB, 400298ME, 400674CA, 400718PS, 400669LD, 402062KR, 400606HW, 401297KC, 400675HC, 400743LS, 400051MR, 401006ES, 400203NA, 402065BG, 401214BJ, 401401BA, 402012RR, 400460DM, 400033KC, 400368SD, 400348DK, 401766MR, 401104DM, 400650RM, 400206SC, 400729HC, 401791FG, 400107MJ, 400270BD, 401739BJ, 401377MA, 400413FJ, 401977ES, 400282RA, 401347DH, 400411TG, 401785MJ, 400038CK, 400825TW, 400738WM, 401870FB, 401084TD, 400110MD, 400768MN, 401125LM, 401717LP, 400960TN, 400967PK, 401423BA, 401348RB, 400829MR, 401864CV, 401563TK, 401513KC, 401630MK, 400800MW, 401606CG, 401478RD, 400361HC, 401311GL, 400547BS, 400387HE, 400047DS, 400639RP, 400211BJ, 401086MD, 400978JG, 400371GA, 401795SP, 401702GB, 400258BC, 400520FM, 401307VR, 401778CB, 401176BD, 400474GF, 401700BN, 401514BA, 400329HJ, 400430KV, 400444MM, 401391PJ, 400837HN, 400454RE, 400542EG, 400770MA, 400471YS, 402009WP, 401295HB, 401025SM, 400759FV, 401894PD, 401661HD, 400410CD, 401265CB, 400769SL, 401797LS, 401681MS, 400106PC, 401912HD, 401177SL, 400508RD, 402042BJ, 401284NA, 400266BA, 400213DB, 400178RH, 400079AP, 400238BB, 401517PR, 401068SD, 400782IE, 401180GR, 400269DA, 401362ME, 400801HS, 400287BP, 401191MI, 401459HF, 400911GA, 400927BD, 400145BL, 400880TM, 401852SK, 401212HJ, 401489CB, 401400NP, 401385BB, 400132HN, 401956DQ, 401077VC, 400876OG, 400313DF, 400626FC, 400468OB, 400622SJ, 401498HH, 401330RR, 401966SR, 401403TD, 400595CP, 401457WK, 401931JL, 400449PK, 401845MJ, 401195PN, 400834SS, 400629BM, 400199SA, 401824MM, 401368WR, 400340CD, 401556KR, 400797ST, 401402EN, 400425SL, 401030GI, 401190WC, 400441GS, 401308LD, 400241CP, 400360SM, 401019MP, 400131CM, 401281BP, 400627CC, 400631SJ, 400127MD, 401155ML, 400338SR, 400564SN, 401303FM, 401198TI, 400836LK, 401818PC, 400341GL, 401801LA, 401393JW, 400582WS, 400113LD, 401646MC, 401238QR, 401234MB, 400442FE, 400929MM, 401979TB, 401726LW, 400663MD, 400615RI, 401331LJ, 400515ZG, 401900RJ, 401714BM, 401437MJ, 400870KC, 401939GD, 401091HS, 401834CB, 401736BF, 401589HP, 401913GT, 401594MP, 401210PB, 401278DM, 401822TL, 401825TH, 400076LC, 401419SW, 401326LI, 401813DN, 401771OS, 400724CD, 401942MP, 401952UH, 402054BD, 400888MS, 401493HC, 400869BK, 401919MD, 401011PJ, 402074RR, 401874DJ, 401696CG, 401112LG, 401359HF, 400943DV, 400451kh, 401057SS, 401595BL, 400458LS, 400881GS, 400845ML, 401847RK, 400677HD, 401012TP, 401010HT, 400072GR, 400205SP, 4000046CJ, 401143LK, 401215MJ, 400879DS, 400792RE, 400778SR, 401817MC, 401354KM, 400130HA, 400084DM, 401040KM, 401453OL, 401969DR, 401053MF, 400209BS, 400243CK, 400138LA, 400668TD, 400982BS | | Known Genes | SIRPB1 | | Method | SNP array | | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | | Platform | Affymetrix CytoScan HD 2.7M array | | Comments | | | Reference | Uddin_et_al_2014 | | Pubmed ID | 25503493 | | Accession Number(s) | esv3584408
| | Frequency | | Sample Size | 873 | | Observed Gain | 0 | | Observed Loss | 289 | | Observed Complex | 0 | | Frequency | n/a |
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