A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3584392



Internal ID18365904
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr2:241063033..241077461hg38UCSC Ensembl
Innerchr2:242002450..242016876hg19UCSC Ensembl
Cytoband2q37.3
Allele length
AssemblyAllele length
hg3814429
hg1914427
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9837128, essv9837130, essv9837131, essv9837129
Samples401173AI, 400827MM, 401855RE, 401763SG
Known GenesSNED1
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3584392
Frequency
Sample Size873
Observed Gain0
Observed Loss4
Observed Complex0
Frequencyn/a


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