Variant DetailsVariant: esv3584365 Internal ID | 18365877 | Landmark | | Location Information | | Cytoband | 2q36.3 | Allele length | Assembly | Allele length | hg38 | 16419 | hg19 | 16419 |
| Variant Type | CNV loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | essv9837061, essv9837062, essv9837064, essv9837058, essv9837068, essv9837070, essv9837065, essv9837069, essv9837067, essv9837059, essv9837060, essv9837071, essv9837063, essv9837056, essv9837057 | Samples | 401852SK, 401235IA, 400068PW, 401500OM, 401029SD, 401251WN, 401623SN, 401125LM, 400829MR, 401892MJ, 401176BD, 401112LG, 400788PV, 401359HF, 401016IT | Known Genes | LOC646736 | Method | SNP array | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | Platform | Affymetrix CytoScan HD 2.7M array | Comments | | Reference | Uddin_et_al_2014 | Pubmed ID | 25503493 | Accession Number(s) | esv3584365
| Frequency | Sample Size | 873 | Observed Gain | 0 | Observed Loss | 15 | Observed Complex | 0 | Frequency | n/a |
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