A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3584099



Internal ID18712297
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr2:144497114..144500878hg38UCSC Ensembl
Innerchr2:145254681..145258445hg19UCSC Ensembl
Cytoband2q22.3
Allele length
AssemblyAllele length
hg383765
hg193765
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9835238, essv9835229, essv9835236, essv9835228, essv9835225, essv9835237, essv9835230, essv9835224, essv9835226, essv9835231, essv9835239, essv9835235, essv9835234, essv9835233, essv9835240, essv9835227
Samples400920MK, 401402EN, 400627CC, 400606HW, 400743LS, 400066MA, 401263HS, 400107MJ, 400577MK, 401900RJ, 400783MJ, 400603CJ, 401025SM, 400677HD, 400811SK, 400719TM
Known GenesZEB2
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3584099
Frequency
Sample Size873
Observed Gain0
Observed Loss16
Observed Complex0
Frequencyn/a


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