A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3583745



Internal ID18711943
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr2:38290565..38295777hg38UCSC Ensembl
Innerchr2:38517707..38522919hg19UCSC Ensembl
Cytoband2p22.2
Allele length
AssemblyAllele length
hg385213
hg195213
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9821999, essv9821977, essv9822021, essv9821988, essv9822010
Samples400455SJ, 401253MC, 401646MC, 400686BM, 402009WP
Known GenesATL2
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3583745
Frequency
Sample Size873
Observed Gain0
Observed Loss5
Observed Complex0
Frequencyn/a


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