A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3583641



Internal ID18365153
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr2:9839743..9845584hg38UCSC Ensembl
Innerchr2:9979872..9985713hg19UCSC Ensembl
Cytoband2p25.1
Allele length
AssemblyAllele length
hg385842
hg195842
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv1100e212
Supporting Variantsessv9814545, essv9814567, essv9814556, essv9814578
Samples401067BD, 401844ZD, 401847RK, 400811SK
Known GenesTAF1B
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3583641
Frequency
Sample Size873
Observed Gain0
Observed Loss4
Observed Complex0
Frequencyn/a


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