A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3583534



Internal ID18711732
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr19:54819186..54847978hg38UCSC Ensembl
Innerchr19:55330641..55359433hg19UCSC Ensembl
Cytoband19q13.42
Allele length
AssemblyAllele length
hg3828793
hg1928793
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv1086e212
Supporting Variantsessv9818275, essv9818271, essv9818274, essv9818276, essv9818273, essv9818270, essv9818272, essv9818269
Samples400626FC, 400121PL, 400843FL, 401968HL, 401813DN, 401608GE, 401829FJ, 400130HA
Known GenesKIR2DS4, KIR3DL1
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3583534
Frequency
Sample Size873
Observed Gain0
Observed Loss8
Observed Complex0
Frequencyn/a


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