A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3583464



Internal ID18364976
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr19:50818135..50842312hg38UCSC Ensembl
Innerchr19:51321391..51345568hg19UCSC Ensembl
Cytoband19q13.33
Allele length
AssemblyAllele length
hg3824178
hg1924178
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9817735, essv9817746, essv9817766, essv9817762, essv9817750, essv9817764, essv9817744, essv9817736, essv9817745, essv9817752, essv9817737, essv9817760, essv9817741, essv9817753, essv9817759, essv9817748, essv9817739, essv9817738, essv9817761, essv9817747, essv9817742, essv9817757, essv9817763, essv9817765, essv9817740, essv9817758, essv9817749, essv9817751
Samples401110GJ, 401162TM, 401911FL, 401931JL, 401698SB, 401468RL, 400643LD, 400953MR, 400307HW, 401104DM, 400218WK, 401732HW, 400383HL, 400236DB, 401591BE, 400960TN, 401526WB, 401346FJ, 400050RL, 400361HC, 402074RR, 401795SP, 401176BD, 400728PB, 400410CD, 401809FU, 400084DM, 401612HB
Known GenesKLK1, KLK15, MGC45922
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3583464
Frequency
Sample Size873
Observed Gain0
Observed Loss28
Observed Complex0
Frequencyn/a


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