A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3583359



Internal ID18364871
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr1:2777970..3286320hg38UCSC Ensembl
Innerchr1:2694517..3202884hg19UCSC Ensembl
Cytoband1p36.32
Allele length
AssemblyAllele length
hg38508351
hg19508368
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9783644
Samples401842BJ
Known GenesACTRT2, LINC00982, MIR4251, PRDM16, TTC34
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3583359
Frequency
Sample Size873
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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