A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3582860



Internal ID18364372
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr13:113756381..113867871hg38UCSC Ensembl
Innerchr13:114459354..114570844hg19UCSC Ensembl
Cytoband13q34
Allele length
AssemblyAllele length
hg38111491
hg19111491
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9804604
Samples401950MD
Known GenesGAS6, GAS6-AS1, GAS6-AS2, TMEM255B
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3582860
Frequency
Sample Size873
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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