A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3582796



Internal ID18364308
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr17:47827520..47839274hg38UCSC Ensembl
Innerchr17:45904886..45916640hg19UCSC Ensembl
Cytoband17q21.32
Allele length
AssemblyAllele length
hg3811755
hg1911755
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv947e212
Supporting Variantsessv9814597, essv9814594, essv9814595, essv9814596
Samples400528LR, 401252AE, 401087SF, 400278PD
Known GenesLRRC46, MRPL10, SCRN2
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3582796
Frequency
Sample Size873
Observed Gain0
Observed Loss4
Observed Complex0
Frequencyn/a


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