A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3582724



Internal ID18710922
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr17:46135458..46215376hg38UCSC Ensembl
Innerchr17:44212824..44292742hg19UCSC Ensembl
Cytoband17q21.31
Allele length
AssemblyAllele length
hg3879919
hg1979919
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv941e212
Supporting Variantsessv9814425, essv9814428, essv9814424, essv9814426, essv9814427
Samples401457WK, 401192MJ, 401119DK, 402073LQ, 400785AK
Known GenesKANSL1, KANSL1-AS1
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3582724
Frequency
Sample Size873
Observed Gain0
Observed Loss5
Observed Complex0
Frequencyn/a


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