A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3582718



Internal ID18710916
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr17:46137356..46199252hg38UCSC Ensembl
Innerchr17:44214722..44276618hg19UCSC Ensembl
Cytoband17q21.31
Allele length
AssemblyAllele length
hg3861897
hg1961897
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv941e212
Supporting Variantsessv9814497, essv9814495, essv9814490, essv9814486, essv9814494, essv9814499, essv9814488, essv9814493, essv9814492, essv9814498, essv9814491, essv9814487, essv9814496, essv9814485
Samples401852SK, 401956DQ, 400512LR, 400620MT, 400347VJ, 400606HW, 400773GS, 401495NR, 401691HA, 401084BD, 400611GG, 400483DP, 401354KM, 401066MM
Known GenesKANSL1, KANSL1-AS1
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3582718
Frequency
Sample Size873
Observed Gain0
Observed Loss14
Observed Complex0
Frequencyn/a


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