A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3582700



Internal ID18710898
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr17:45676510..45693629hg38UCSC Ensembl
Innerchr17:43753876..43770995hg19UCSC Ensembl
Cytoband17q21.31
Allele length
AssemblyAllele length
hg3817120
hg1917120
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv932e212
Supporting Variantsessv9814075, essv9814076
Samples401093VL, 401017SC
Known GenesCRHR1
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3582700
Frequency
Sample Size873
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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