A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3582514



Internal ID18364026
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr17:9102862..9107126hg38UCSC Ensembl
Innerchr17:9006179..9010443hg19UCSC Ensembl
Cytoband17p13.1
Allele length
AssemblyAllele length
hg384265
hg194265
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9812652, essv9812651, essv9812650, essv9812653, essv9812654, essv9812655
Samples401330RR, 400032RC, 400704LC, 400795CL, 401111LH, 401274PA
Known GenesNTN1
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3582514
Frequency
Sample Size873
Observed Gain0
Observed Loss6
Observed Complex0
Frequencyn/a


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