Variant DetailsVariant: esv3582409 Internal ID | 18363921 | Landmark | | Location Information | | Cytoband | 16q23.3 | Allele length | Assembly | Allele length | hg38 | 9108 | hg19 | 9108 |
| Variant Type | CNV loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | essv9812050, essv9812041, essv9812046, essv9812037, essv9812053, essv9812058, essv9812048, essv9812036, essv9812035, essv9812043, essv9812038, essv9812054, essv9812039, essv9812045, essv9812051, essv9812042, essv9812061, essv9812040, essv9812057, essv9812052, essv9812059, essv9812056, essv9812047, essv9812060, essv9812049, essv9812034 | Samples | 400908PJ, 400554WB, 400455SJ, 401330RR, 401434VN, 401136LB, 400893ZE, 401695BT, 401687LR, 400343BD, 401214BJ, 400127MD, 401406KF, 400002HK, 401873BK, 400763BT, 401725MR, 401027KW, 401863BD, 401864CV, 401630MK, 401075MN, 401414CR, 400108BJ, 400261RN, 401482CB | Known Genes | CDH13 | Method | SNP array | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | Platform | Affymetrix CytoScan HD 2.7M array | Comments | | Reference | Uddin_et_al_2014 | Pubmed ID | 25503493 | Accession Number(s) | esv3582409
| Frequency | Sample Size | 873 | Observed Gain | 0 | Observed Loss | 26 | Observed Complex | 0 | Frequency | n/a |
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