Variant DetailsVariant: esv3582253 Internal ID | 18363765 | Landmark | | Location Information | | Cytoband | 16q21 | Allele length | Assembly | Allele length | hg38 | 15965 | hg19 | 15965 |
| Variant Type | CNV loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | essv9811147, essv9811148, essv9811135, essv9811141, essv9811136, essv9811144, essv9811146, essv9811139, essv9811140, essv9811153, essv9811155, essv9811149, essv9811142, essv9811150, essv9811151, essv9811133, essv9811132, essv9811137, essv9811152, essv9811138, essv9811154, essv9811157, essv9811143 | Samples | 400737GC, 400683EC, 400340CD, 401536BD, 401551MB, 401780BB, 402012RR, 400353ML, 400836LK, 401532LJ, 400107MJ, 401419SW, 401778CB, 40050SB, 401922MW, 401914PR, 400728PB, 401552BK, 402060PD, 400410CD, 400971MK, 401265CB, 400300SD | Known Genes | CNGB1 | Method | SNP array | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | Platform | Affymetrix CytoScan HD 2.7M array | Comments | | Reference | Uddin_et_al_2014 | Pubmed ID | 25503493 | Accession Number(s) | esv3582253
| Frequency | Sample Size | 873 | Observed Gain | 0 | Observed Loss | 23 | Observed Complex | 0 | Frequency | n/a |
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