A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3582220



Internal ID18710418
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr16:55764854..55782318hg38UCSC Ensembl
Innerchr16:55798766..55816230hg19UCSC Ensembl
Cytoband16q12.2
Allele length
AssemblyAllele length
hg3817465
hg1917465
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv835e212
Supporting Variantsessv9811047, essv9811046
Samples400507VD, 400686BM
Known GenesCES1P1
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3582220
Frequency
Sample Size873
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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