Variant DetailsVariant: esv3582122 Internal ID | 18363634 | Landmark | | Location Information | | Cytoband | 16p12.1 | Allele length | Assembly | Allele length | hg38 | 9778 | hg19 | 9778 |
| Variant Type | CNV loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | dgv811e212 | Supporting Variants | essv9810489, essv9810493, essv9810492, essv9810490, essv9810482, essv9810483, essv9810491, essv9810487, essv9810486, essv9810485, essv9810484 | Samples | 401806DL, 400618GC, 401052BM, 400658BW, 400871CM, 400348DK, 401016IT, 402048WB, 400312CR, 400879DS, 400266BA | Known Genes | IL4R | Method | SNP array | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | Platform | Affymetrix CytoScan HD 2.7M array | Comments | | Reference | Uddin_et_al_2014 | Pubmed ID | 25503493 | Accession Number(s) | esv3582122
| Frequency | Sample Size | 873 | Observed Gain | 0 | Observed Loss | 11 | Observed Complex | 0 | Frequency | n/a |
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