Variant DetailsVariant: esv3582075 | Internal ID | 18710273 | | Landmark | | | Location Information | | | Cytoband | 16p12.3 | | Allele length | | Assembly | Allele length | | hg38 | 20068 | | hg19 | 20068 |
| | Variant Type | CNV loss | | Copy Number | | | Allele State | | | Allele Origin | | | Probe Count | | | Validation Flag | | | Merged Status | M | | Merged Variants | dgv803e212 | | Supporting Variants | essv9810319, essv9810329, essv9810306, essv9810314, essv9810352, essv9810331, essv9810294, essv9810280, essv9810278, essv9810293, essv9810320, essv9810301, essv9810325, essv9810309, essv9810281, essv9810291, essv9810337, essv9810343, essv9810316, essv9810284, essv9810354, essv9810335, essv9810353, essv9810275, essv9810304, essv9810330, essv9810285, essv9810332, essv9810302, essv9810315, essv9810305, essv9810342, essv9810348, essv9810318, essv9810276, essv9810286, essv9810328, essv9810321, essv9810347, essv9810295, essv9810324, essv9810274, essv9810327, essv9810349, essv9810346, essv9810345, essv9810312, essv9810340, essv9810313, essv9810317, essv9810271, essv9810273, essv9810308, essv9810297, essv9810292, essv9810298, essv9810351, essv9810300, essv9810307, essv9810341, essv9810334, essv9810279, essv9810296, essv9810323, essv9810290, essv9810336, essv9810272, essv9810338, essv9810339, essv9810282, essv9810326, essv9810350, essv9810283, essv9810303, essv9810289, essv9810287 | | Samples | 400920MK, 401806DL, 400308SP, 401110GJ, 400336BG, 400101EH, 400683EC, 401117NA, 400866RR, 401302LJ, 401442WR, 401845MJ, 400625FT, 400325BE, 401824MM, 401468RL, 400059SV, 400934LA, 400643LD, 400493KH, 401582GG, 401308LD, 401936BA, 401551MB, 400528LR, 401281BP, 401297KC, 401860TJ, 400482MD, 401687LR, 400588BE, 400337HG, 401214BJ, 400564SN, 401773AM, 400579HJ, 401801LA, 401791FG, 400974PS, 400533BB, 400040CN, 401623SN, 401825TH, 401879HJ, 401630MK, 401506LK, 401619BT, 401311GL, 401892MJ, 400603CJ, 400362TV, 401778CB, 401884WJ, 401696CG, 401700BN, 401514BA, 401182OC, 400943DV, 400624RJ, 401428LD, 400158FB, 400295PS, 400501SJ, 4000046CJ, 401152MV, 402008MC, 400106PC, 401912HD, 401154BR, 402023EC, 401177SL, 400291VJ, 400150SS, 400021ME, 400255CD, 400668TD | | Known Genes | | | Method | SNP array | | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | | Platform | Affymetrix CytoScan HD 2.7M array | | Comments | | | Reference | Uddin_et_al_2014 | | Pubmed ID | 25503493 | | Accession Number(s) | esv3582075
| | Frequency | | Sample Size | 873 | | Observed Gain | 0 | | Observed Loss | 76 | | Observed Complex | 0 | | Frequency | n/a |
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