Variant DetailsVariant: esv3582065 | Internal ID | 18363577 | | Landmark | | | Location Information | | | Cytoband | 16p12.3 | | Allele length | | Assembly | Allele length | | hg38 | 1777 | | hg19 | 1777 |
| | Variant Type | CNV loss | | Copy Number | | | Allele State | | | Allele Origin | | | Probe Count | | | Validation Flag | | | Merged Status | M | | Merged Variants | | | Supporting Variants | essv9810214, essv9810167, essv9810257, essv9810173, essv9810145, essv9810219, essv9810189, essv9810208, essv9810220, essv9810248, essv9810183, essv9810226, essv9810184, essv9810130, essv9810182, essv9810237, essv9810165, essv9810235, essv9810193, essv9810202, essv9810195, essv9810197, essv9810251, essv9810192, essv9810190, essv9810176, essv9810223, essv9810146, essv9810157, essv9810246, essv9810156, essv9810138, essv9810149, essv9810128, essv9810179, essv9810161, essv9810224, essv9810136, essv9810230, essv9810147, essv9810164, essv9810158, essv9810141, essv9810234, essv9810152, essv9810171, essv9810242, essv9810221, essv9810132, essv9810160, essv9810150, essv9810203, essv9810216, essv9810129, essv9810231, essv9810186, essv9810210, essv9810229, essv9810168, essv9810154, essv9810254, essv9810198, essv9810153, essv9810238, essv9810143, essv9810245, essv9810185, essv9810249, essv9810253, essv9810135, essv9810206, essv9810209, essv9810137, essv9810239, essv9810215, essv9810207, essv9810131, essv9810232, essv9810134, essv9810175, essv9810217, essv9810170, essv9810201, essv9810241, essv9810218, essv9810204, essv9810194, essv9810205, essv9810181, essv9810250, essv9810180, essv9810196, essv9810169, essv9810191, essv9810236, essv9810172, essv9810187, essv9810151, essv9810162, essv9810139, essv9810227, essv9810247, essv9810212, essv9810148, essv9810159, essv9810243, essv9810178, essv9810256, essv9810252, essv9810240, essv9810140, essv9810163, essv9810213, essv9810174, essv9810142, essv9810225, essv9810228 | | Samples | 401266HM, 401936BA, 400782IE, 400797ST, 401619BT, 401979TB, 400107MJ, 401532LJ, 401105WS, 401175FA, 400076LC, 401489CB, 401104DM, 401972BA, 401514BA, 401721CP, 400956AM, 401030GI, 401200BD, 402024BB, 400277LM, 400983PV, 401027KW, 401943KA, 401869BG, 400653GP, 400494ML, 401490TL, 400730SH, 400792RE, 401771OS, 400930MK, 401311GL, 402016HZ, 400113LD, 401346FJ, 401457WK, 400460DM, 401975VD, 400155CW, 401864CV, 401334DH, 400661AD, 400352CA, 401239PR, 401824MM, 401993HM, 400502GS, 401110GJ, 401203MP, 400377WJ, 401506LK, 400070PC, 401420PJ, 401427CB, 401475MK, 400077EB, 401250WD, 401554VN, 401366WD, 401732HW, 400033KC, 400899NK, 401655DC, 400103BN, 400032RC, 401825TH, 400385LJ, 400450FG, 400876OG, 400577MK, 401820SD, 400341GL, 401084BD, 400528LR, 400763BT, 401496SL, 401834CB, 401390DG, 401191MI, 400838AM, 400344DR, 401498HH, 401102RD, 400177SJ, 400285FA, 401288LD, 401778CB, 400124FR, 400639RP, 400084DM, 401362ME, 400438DB, 400855BD, 400817MB, 401185LE, 401284NA, 401608GE, 401808PS, 400041LJ, 401198TI, 400292LP, 401997HB, 401119DK, 400272AE, 401261HD, 401693RC, 400122PL, 401364NA, 401914PR, 400886MP, 400265LK, 400156WT, 401620BA, 401513KC, 401832MC, 400340CD | | Known Genes | XYLT1 | | Method | SNP array | | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | | Platform | Affymetrix CytoScan HD 2.7M array | | Comments | | | Reference | Uddin_et_al_2014 | | Pubmed ID | 25503493 | | Accession Number(s) | esv3582065
| | Frequency | | Sample Size | 873 | | Observed Gain | 0 | | Observed Loss | 117 | | Observed Complex | 0 | | Frequency | n/a |
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