A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3582012



Internal ID18363524
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr16:13200132..13204498hg38UCSC Ensembl
Innerchr16:13293989..13298355hg19UCSC Ensembl
Cytoband16p13.12
Allele length
AssemblyAllele length
hg384367
hg194367
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9809983, essv9809946, essv9809963, essv9809984, essv9809975, essv9809952, essv9809942, essv9809982, essv9809971, essv9809979, essv9809958, essv9809985, essv9809955, essv9809970, essv9809966, essv9809972, essv9809964, essv9809947, essv9809981, essv9809968, essv9809980, essv9809986, essv9809956, essv9809961, essv9809969, essv9809959, essv9809967, essv9809973, essv9809950, essv9809949, essv9809948, essv9809960, essv9809962, essv9809944, essv9809951, essv9809953, essv9809974, essv9809957, essv9809945
Samples400238BB, 400300SD, 400545EW, 401105WS, 401735LE, 400649PS, 400956AM, 401262RR, 401030GI, 400362TV, 400213DB, 401397WN, 401210PB, 400854SG, 401442WR, 401423BA, 400053LE, 401873BK, 400722OM, 401240ML, 401540NA, 401550SP, 400230TB, 401084BD, 401618HR, 400825TW, 400627CC, 401215MJ, 401133JG, 401415CB, 401860TJ, 400624RJ, 400328LM, 400432VA, 401862AN, 401926MR, 400889CM, 401353BC, 400570RW
Known GenesSHISA9
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3582012
Frequency
Sample Size873
Observed Gain0
Observed Loss39
Observed Complex0
Frequencyn/a


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