A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3581895



Internal ID18710093
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr16:345740..351213hg38UCSC Ensembl
Innerchr16:395740..401213hg19UCSC Ensembl
Cytoband16p13.3
Allele length
AssemblyAllele length
hg385474
hg195474
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv771e212
Supporting Variantsessv9809625, essv9809626
Samples400218WK, 401182OC
Known GenesAXIN1
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3581895
Frequency
Sample Size873
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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