A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3581889



Internal ID18363401
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr16:306222..308308hg38UCSC Ensembl
Innerchr16:356222..358308hg19UCSC Ensembl
Cytoband16p13.3
Allele length
AssemblyAllele length
hg382087
hg192087
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv770e212
Supporting Variantsessv9809619, essv9809620, essv9809622
Samples401856GC, 400834SS, 400012CJ
Known GenesAXIN1
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3581889
Frequency
Sample Size873
Observed Gain0
Observed Loss3
Observed Complex0
Frequencyn/a


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