A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3581854



Internal ID18363366
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:98684558..98685714hg38UCSC Ensembl
Innerchr15:99227787..99228943hg19UCSC Ensembl
Cytoband15q26.3
Allele length
AssemblyAllele length
hg381157
hg191157
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9809456, essv9809454
Samples401249TP, 400983PV
Known GenesIGF1R
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3581854
Frequency
Sample Size873
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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