A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3581783



Internal ID18363295
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:81155286..81171619hg38UCSC Ensembl
Innerchr15:81447627..81463960hg19UCSC Ensembl
Cytoband15q25.1
Allele length
AssemblyAllele length
hg3816334
hg1916334
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv751e212
Supporting Variantsessv9809287, essv9809290, essv9809291, essv9809292, essv9809289, essv9809286
Samples401852SK, 400268SY, 400789KV, 400014SL, 400818BL, 400266BA
Known Genes
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3581783
Frequency
Sample Size873
Observed Gain0
Observed Loss6
Observed Complex0
Frequencyn/a


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