Variant DetailsVariant: esv3581766![](http://dgv.tcag.ca/gb2/gbrowse_img/dgv2_hg38/?name=chr15:76221921..76223779;width=800;overview=1) Internal ID | 18363278 | Landmark | | Location Information | | Cytoband | 15q24.2 | Allele length | Assembly | Allele length | hg38 | 1859 | hg19 | 1859 |
| Variant Type | CNV loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | essv9808883, essv9808882, essv9808880, essv9808881, essv9808884, essv9808879 | Samples | 400554WB, 400917CG, 401448BJ, 400914ER, 400811SK, 401180GR | Known Genes | ETFA | Method | SNP array | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | Platform | Affymetrix CytoScan HD 2.7M array | Comments | | Reference | Uddin_et_al_2014 | Pubmed ID | 25503493 | Accession Number(s) | esv3581766
| Frequency | Sample Size | 873 | Observed Gain | 0 | Observed Loss | 6 | Observed Complex | 0 | Frequency | n/a |
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