A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3581646



Internal ID18363158
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:40227830..40237146hg38UCSC Ensembl
Innerchr15:40520031..40529347hg19UCSC Ensembl
Cytoband15q15.1
Allele length
AssemblyAllele length
hg389317
hg199317
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv731e212
Supporting Variantsessv9808479, essv9808480, essv9808478, essv9808475, essv9808476
Samples400906BR, 401355CD, 400186WC, 401879HJ, 401438HT
Known GenesPAK6
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3581646
Frequency
Sample Size873
Observed Gain0
Observed Loss5
Observed Complex0
Frequencyn/a


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