A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3581626



Internal ID18363138
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:34379545..34576795hg38UCSC Ensembl
Innerchr15:34671746..34868996hg19UCSC Ensembl
Cytoband15q14
Allele length
AssemblyAllele length
hg38197251
hg19197251
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9808346, essv9808343, essv9808345, essv9808342, essv9808341, essv9808340
Samples400364SS, 401183HP, 401690HA, 401364NA, 400863SS, 401143LK
Known GenesGOLGA8A, GOLGA8B, MIR1233-1, MIR1233-2
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3581626
Frequency
Sample Size873
Observed Gain0
Observed Loss6
Observed Complex0
Frequencyn/a


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