A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3581614



Internal ID18363126
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:32766103..32773431hg38UCSC Ensembl
Innerchr15:33058304..33065632hg19UCSC Ensembl
Cytoband15q13.3
Allele length
AssemblyAllele length
hg387329
hg197329
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9808317, essv9808316
Samples400532MH, 401845MJ
Known GenesFMN1
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3581614
Frequency
Sample Size873
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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