A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3581366



Internal ID18709564
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr14:87802393..87817277hg38UCSC Ensembl
Innerchr14:88268737..88283621hg19UCSC Ensembl
Cytoband14q31.3
Allele length
AssemblyAllele length
hg3814885
hg1914885
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9807065, essv9807064
Samples401842BJ, 400586RD
Known Genes
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3581366
Frequency
Sample Size873
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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