A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3581078



Internal ID18709276
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr14:23986203..24010488hg38UCSC Ensembl
Innerchr14:24455412..24479697hg19UCSC Ensembl
Cytoband14q11.2
Allele length
AssemblyAllele length
hg3824286
hg1924286
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv617e212
Supporting Variantsessv9805099, essv9805101, essv9805097, essv9805098
Samples401939GD, 400258BC, 400837HN, 400769SL
Known GenesDHRS4L1, DHRS4L2
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3581078
Frequency
Sample Size873
Observed Gain0
Observed Loss4
Observed Complex0
Frequencyn/a


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