A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3581077



Internal ID18709275
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr14:23981893..24010488hg38UCSC Ensembl
Innerchr14:24451102..24479697hg19UCSC Ensembl
Cytoband14q11.2
Allele length
AssemblyAllele length
hg3828596
hg1928596
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv617e212
Supporting Variantsessv9805082, essv9805081, essv9805080, essv9805083
Samples401249TP, 400060MC, 400422PN, 400410CD
Known GenesDHRS4L1, DHRS4L2
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3581077
Frequency
Sample Size873
Observed Gain0
Observed Loss4
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer