A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3580590



Internal ID18708788
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr13:30352292..30357556hg38UCSC Ensembl
Innerchr13:30926429..30931693hg19UCSC Ensembl
Cytoband13q12.3
Allele length
AssemblyAllele length
hg385265
hg195265
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9803041, essv9803040
Samples400509CJ, 401791FG
Known GenesLINC00426
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3580590
Frequency
Sample Size873
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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