A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3580532



Internal ID18362044
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr12:128794437..128806710hg38UCSC Ensembl
Innerchr12:129278982..129291255hg19UCSC Ensembl
Cytoband12q24.32
Allele length
AssemblyAllele length
hg3812274
hg1912274
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv527e212
Supporting Variantsessv9802638, essv9802639, essv9802637
Samples401402EN, 400705KK, 401056TJ
Known GenesSLC15A4
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3580532
Frequency
Sample Size873
Observed Gain0
Observed Loss3
Observed Complex0
Frequencyn/a


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