A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3580488



Internal ID18362000
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr12:117134116..117143048hg38UCSC Ensembl
Innerchr12:117571921..117580853hg19UCSC Ensembl
Cytoband12q24.22
Allele length
AssemblyAllele length
hg388933
hg198933
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv519e212
Supporting Variantsessv9802495, essv9802496
Samples400579HJ, 400242TP
Known Genes
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3580488
Frequency
Sample Size873
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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