A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3580446



Internal ID18361958
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr12:104129444..104138892hg38UCSC Ensembl
Innerchr12:104523222..104532670hg19UCSC Ensembl
Cytoband12q23.3
Allele length
AssemblyAllele length
hg389449
hg199449
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9802152, essv9802153
Samples401057SS, 401012TP
Known GenesNFYB
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3580446
Frequency
Sample Size873
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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