A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3580423



Internal ID18361935
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr12:100027625..100034540hg38UCSC Ensembl
Innerchr12:100421403..100428318hg19UCSC Ensembl
Cytoband12q23.1
Allele length
AssemblyAllele length
hg386916
hg196916
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv508e212
Supporting Variantsessv9802102, essv9802098, essv9802090, essv9802103, essv9802096, essv9802091, essv9802097, essv9802093, essv9802099, essv9802095, essv9802104, essv9802101, essv9802094, essv9802092
Samples400359OR, 401498HH, 401899MB, 401281BP, 400033KC, 400375KA, 400082SD, 401513KC, 400800MW, 401017SC, 401812HG, 401200BD, 400354TJ, 401438HT
Known Genes
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3580423
Frequency
Sample Size873
Observed Gain0
Observed Loss14
Observed Complex0
Frequencyn/a


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