A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3580403



Internal ID18361915
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr12:99401982..99409343hg38UCSC Ensembl
Innerchr12:99795760..99803121hg19UCSC Ensembl
Cytoband12q23.1
Allele length
AssemblyAllele length
hg387362
hg197362
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv503e212
Supporting Variantsessv9802060, essv9802058, essv9802059
Samples401030GI, 400606HW, 401448BJ
Known GenesANKS1B
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3580403
Frequency
Sample Size873
Observed Gain0
Observed Loss3
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer