A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3580402



Internal ID18361914
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr12:99398001..99404943hg38UCSC Ensembl
Innerchr12:99791779..99798721hg19UCSC Ensembl
Cytoband12q23.1
Allele length
AssemblyAllele length
hg386943
hg196943
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv501e212
Supporting Variantsessv9801947, essv9801948, essv9801949, essv9801942, essv9801946, essv9801943, essv9801945
Samples401067BD, 400106PC, 400329HJ, 401700BN, 400749VW, 401778CB, 400123WN
Known GenesANKS1B
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3580402
Frequency
Sample Size873
Observed Gain0
Observed Loss7
Observed Complex0
Frequencyn/a


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