A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3580395



Internal ID18361907
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr12:99401982..99403298hg38UCSC Ensembl
Innerchr12:99795760..99797076hg19UCSC Ensembl
Cytoband12q23.1
Allele length
AssemblyAllele length
hg381317
hg191317
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9801970, essv9801969, essv9801968
Samples401033DJ, 401401BA, 400155CW
Known GenesANKS1B
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3580395
Frequency
Sample Size873
Observed Gain0
Observed Loss3
Observed Complex0
Frequencyn/a


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