A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3580379



Internal ID18708577
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr12:95518596..95528911hg38UCSC Ensembl
Innerchr12:95912372..95922687hg19UCSC Ensembl
Cytoband12q22
Allele length
AssemblyAllele length
hg3810316
hg1910316
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9801877, essv9801874, essv9801876, essv9801873, essv9801875
Samples401962BK, 400523GB, 401353BC, 401618HR, 401057SS
Known GenesUSP44
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3580379
Frequency
Sample Size873
Observed Gain0
Observed Loss5
Observed Complex0
Frequencyn/a


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