A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3580190



Internal ID18361702
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr12:23913033..23918060hg38UCSC Ensembl
Innerchr12:24065967..24070994hg19UCSC Ensembl
Cytoband12p12.1
Allele length
AssemblyAllele length
hg385028
hg195028
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv468e212
Supporting Variantsessv9800939, essv9800935, essv9800851, essv9800895, essv9800926, essv9800859, essv9800854, essv9800942, essv9800905, essv9800849, essv9800868, essv9800941, essv9800923, essv9800864, essv9800885, essv9800893, essv9800877, essv9800890, essv9800925, essv9800861, essv9800876, essv9800903, essv9800894, essv9800848, essv9800940, essv9800869, essv9800842, essv9800874, essv9800856, essv9800846, essv9800904, essv9800881, essv9800839, essv9800879, essv9800906, essv9800865, essv9800934, essv9800845, essv9800938, essv9800924, essv9800872, essv9800837, essv9800841, essv9800858, essv9800847, essv9800920, essv9800883, essv9800929, essv9800918, essv9800919, essv9800931, essv9800853, essv9800909, essv9800873, essv9800871, essv9800896, essv9800863, essv9800862, essv9800880, essv9800875, essv9800899, essv9800936, essv9800852, essv9800892, essv9800937, essv9800838, essv9800870, essv9800886, essv9800921, essv9800928, essv9800917, essv9800913, essv9800843, essv9800898, essv9800897, essv9800907, essv9800887, essv9800915, essv9800901, essv9800912, essv9800891, essv9800860, essv9800850, essv9800840, essv9800916, essv9800927, essv9800882, essv9800908, essv9800930, essv9800932, essv9800888, essv9800857, essv9800902, essv9800914, essv9800884, essv9800910
Samples400920MK, 400145BL, 400880TM, 400204SC, 400105BB, 400594VJ, 401077VC, 401487FW, 400468OB, 401911FL, 402067KS, 400866RR, 401966SR, 400141CC, 400655WB, 401491BB, 401249TP, 401845MJ, 400625FT, 401857VG, 401132CH, 401551MB, 400893ZE, 401926MR, 400743LS, 401263HS, 401113MJ, 400503HD, 400231LP, 402012RR, 401165SB, 401155ML, 401596PJ, 401495NR, 400717BD, 402029KJ, 401997HB, 401406KF, 400733SW, 401377MA, 400282RA, 400383HL, 400038CK, 400007RG, 400974PS, 401870FB, 400110MD, 400768MN, 401717LP, 400660GK, 401694SG, 401210PB, 400093BL, 401862AN, 400914ER, 400381CA, 400994HJ, 401879HJ, 401513KC, 401506LK, 400724CD, 401619BT, 401311GL, 400547BS, 400006DK, 400249BC, 401039PA, 400014SL, 401580CA, 401369GR, 401176BD, 401922MW, 400329HJ, 400795CL, 400542EG, 400601WC, 402009WP, 400677HD, 401611CD, 400759FV, 401661HD, 400410CD, 401571SD, 401567BD, 400930MK, 401056TJ, 401763SG, 401817MC, 401040KM, 400581VJ, 400079AP, 401254AE, 400890IT, 400243CK, 401993HM, 400704LC
Known GenesSOX5
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3580190
Frequency
Sample Size873
Observed Gain0
Observed Loss96
Observed Complex0
Frequencyn/a


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