A curated catalogue of human genomic structural variation

Variant Details

Variant: esv3580104

Internal ID18361616
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr12:10430787..10443276hg38UCSC Ensembl
Innerchr12:10583386..10595875hg19UCSC Ensembl
Allele length
AssemblyAllele length
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv452e212
Supporting Variantsessv9800203, essv9800206, essv9800205, essv9800208, essv9800207, essv9800204
Samples401391PJ, 401927SK, 401652HL, 400743LS, 400852WJ, 401879HJ
Known GenesKLRC2
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Pubmed ID25503493
Accession Number(s)esv3580104
Sample Size873
Observed Gain0
Observed Loss6
Observed Complex0

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